I’m attempting to grow goldenseal in my aquaponic system, but the roots of my plants have blackened and there was some yellow wax oozing out of them. What can I do?

By Frank Rauscher | Last updated: December 14, 2021

goldenseal plant

When root systems become discolored or darkened this generally indicates disease. A common culprit is Phytophthora species, the genus of a plant-damaging water mold. Phytophthora thrive, grow, reproduce and infect plant roots in water, saturated soil, and along river banks and ponds. Flooded or saturated soils are not favorable for plant growth and can predispose plants to infection. Anywhere significant quantities of water collect, accumulate or flow, Phytophthora spp. can be found. The lack of oxygen in the water is typically what helps this fungus/mold flourish in ponds. Usually, because of the root failure, the plants will begin to wilt or fail completely.

It is possible that your situation could be a different pest, however. You can bring (or ship) specimens to a certified laboratory to get confirmation—just check the associated costs before proceeding with this. The downside of mailing away from answers is that diseases spread quickly, especially to other plants of the same variety.

The best way to control a phytophthora disease is before it starts. In the landscape, water regulation and good drainage is vital. In an aquaponic set-up, increase the amount of oxygen in the water with something such as an air pump or air stone. There are meters available for checking the level of oxygen. Make sure your pump runs at least 15 minutes each hour.

Overall, clean stock, crop rotation, sanitation, chemicals as needed, and host resistance are among the controls that can be implemented. Hydrogen peroxide has been successful in controlling the disease on the roots; however, in the case of aquaponics it may not be successful due to dilution issues. Do some research before trying this method.

Removing an infected plant from the water and rinsing the roots in a light concentration of hydrogen peroxide (three per cent), then returning the plant to the aquaponic system might help when done in conjunction with the addition of extra oxygen. As prevention is the best way to treat fungal diseases in the garden, you may need to remove the infected plants and discard them while you work to improve your water quality, and then re-insert new plants.

DYK? Goldenseal is a small plant with a single hairy stem. It has two jagged five-lobed leaves, small flowers and raspberry-like fruit. The bitter-tasting rhizome, or root, is bright yellow or brown, twisted and wrinkled. Goldenseal can be found growing wild in rich, shady soil in the northern United States, but it is now grown mostly on farms. – University of Maryland Medical Center, (

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Written by Frank Rauscher | Writer, Owner of Garden Galaxy

Profile Picture of Frank Rauscher
During his many years of service in horticulture, product development and sales, Frank has performed innumerable visits to landscapes to facilitate a correction for struggling plants or assist with new design. He also writes for Southwest Trees and Turf and The Green Pages, is the owner of Garden Galaxy and manages several websites. He has four children and eight grandchildren.

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